JCU Marine Research Publications for 2005

by blueadmin — last modified 2007-03-23 10:43

physical sciences

Thomas S & Ridd PV (2005) Field assessment of innovative sensor for monitoring of sediment accumulation at inshore coral reefs. Marine Pollution Bulletin, 51, 470 - 480

chemical sciences

Agrawal MS & Bowden BF (2005) Marine Sponge Dysidea heracea revisited: Another Brominated Diphenyl Ether. Marine Drugs, 3, 9 - 14

Da Silva E, Ridd MJ& Klumpp D (2005) Can body burden in the barnacle Balanus amphrite indicate seasonal variation in cadmium concentrations. Estuarine, Coastal and Shelf Science, 65, 159 - 171

Agrawal MS & Bowden BF (2005) A new pyridoacridine alkaloid from the marine ascidian lissoclinum sp. In: Connect 2005 (eds SC Apte & SH Kable). Royal Australian Chemical Institute

earth sciences

Carter RM (2005) A New Zealand climatic template back to c.3.9Ma: ODP Site 1119, Canterbury Bight, south-west Pacific Ocean, and its relationship to onland successions. Journal of the Royal Society of New Zealand, 35 (1), 9 - 42

Fulton CJ & Bellwood DR (2005) Wave-induced water motion and the functional implications for coral reef fish assemblages. Limnology and Oceanography, 50, 255 - 264

Susilo A, Ridd PV & Thomas S (2005) Comparison between tidally driven groundwater flow and flushing of animal burrows in tropical mangrove swamps. Wetlands Ecology and Management, 13, 377 - 388

Susilo A & Ridd PV (2005) The bulk hydraulic conductivity of mangrove soil perforated with animal burrows. Wetlands Ecology and Management, 13, 123 - 133

Stieglitz TC, Kelley R, Beaudoin J, Huges Clarke J, Siwabessy J, Parnu I & Cameron D (2005) Acoustic mapping in the Great Barrier Reef (Australia): what kind of biological and morphological habitat information can we extract from high-resolution multibeam bathymetry data? In: Dynamic Planet 2005 . Dynamic Planet

Stieglitz TC, Kelley J, Beaudoin J, Huges Clarke J & Kinninmonth S (2005) Multibeam Bathymetry Mapping of the Great Barrier Reef Seascape - a Pilot Study. In: Ocean Sciences Meeting . Ocean Science Meeting Supplement

Geology

Faithful JW & Finlayson W (2005) Water quality assessment for sustainable agriculture in the Wet Tropics - a community-assisted approach. Marine Pollution Bulletin, 51, 99 - 112

McKergow L, Prosser IP, Hughes AO & Brodie JE (2005) Sources of sediment to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51, 200 - 211

Page MC & Dickens G (2005) Sediment fluxes to Marion Plateau (southern Great Barrier Reef province) over the last 130 ky: New constraints on 'transgressive-shedding' off northeastern Australia. Marine Geology, 219 (1), 27 - 45

Cooper M, Faithful JW & Shields GA (2005) Sediment dynamics of a large tropical river system: the Burdekin River and Lake Dalrymple, Australia. In: 10th International Symposium on "The Interactions Between Sediments and Water" 198 (eds J Faganeli, N Ogrinc & M Horvat). RMZ - Materials and Geoenvironment, Slovenia

Hua Q, Woodroffe CD, Smithers SG, Barbetti M & Fink D (2005) Radiocarbon in corals from the Cocos (Keeling) Islands and implications for Indian Ocean circulation. Geophysical Research Letters, 32 (L21602),

Holliday D, Stieglitz TC, Cook P & Burnett W (2005) Mapping Rn222 Along the Great Barrier Reef Coastline. In: Ocean Sciences Meeting . Ocean Science Meeting Supplement, Hawaii

Hough ML, Shields GA, Strauss H, Evins L, Henderson RA & Mackenzie S (2005) Linking Cambrian volcanism to marine anoxia and mass extinction: clues from sulphur isotope geochemistry. In: Supercontinents and Earth Evolution Symposium

Stieglitz TC, Burnett W, Bokuniewicz H, Cable J, Charette M, Kontar E, Krupa S, Moore W, Oberdorfer J, Povinec P & Taniguchi M (2005) The quantification of Submarine Groundwater Discharge in the coastal zone via multiple methods - a UNESCO iaea INITIATIVE. In: Monitoring and understanding a Dynamic Planet with Geodetic and Oceanographic Tools . Dynamic Planet

Physical oceanography

Bode L & Mason LB (2005) Evaluation of a nonlinear reef parametrisation for steady flows. Anziam Journal, 46, 1017 - 1034

Greiner R, Herr A, Brodie JE & Haynes DB (2005) A multi-criteria approach to Great Barrier Reef catchment (Queensland, Ausdtralia) diffuse-source pollution problem. Marine Pollution Bulletin, 51, 128 - 137

Bathgate JS & Heron ML (2005) Swell Waves Monitored by HF Ocean Surface Radar at Tweed Heads and Bass Strait. In: 17th Australasian Coastal and Ocean Engineering Conference & the 10th Australasian Port & Harbour Conference 191 - 196 (eds M Townsend & D Walker). The Institution of Engineers, Barton Australia

Heron ML (2005) The Role of HF Ocean Surfacr Radar in Australia as a Long-term Coastal Ocean Monitoring Facility. In: 17th Australasian Coastal and Ocean Engineering Conference & the 10th Australasian Port & Harbour Conference 185 - 190 (eds M Townsend & D Walker). The Institution of Engineers, Barton Australia

Heron ML (2005) Design Parameters for an HF Ocean Surface Radar Installation. In: IEEE Oceans '05 Europe . IEEE

Heron ML, Helzel T, Prytz A, Kniephoff M & Skirving W (2005) PortMap: A VHF Ocean Surface Radar for High Spatial Resolution. In: IEEE Oceans '05 . IEEE

Heron ML, Prytz A, Hoeke R, Brainard R & Page GW (2005) A new high resolution ocean surface radar for mapping currents through oceanic atolls. In: Dynamic Planet 2005 449 - 449. Dynamic Planet

Heron ML, Hoegh-Guldberg O, Willis BL, Skirving W, Caley J, Bayler E & Colton M (2005) HF ocean surface radar as a monitoring technique for coral bleaching. In: Dynamic Planet 2005 192 - 192. Dynamic Planet

Heron ML (2005) Salinity Processing and Performance in Coastal Zones. In: SMOS Validation and Retrieval Team . eesa (1)

Heron ML (2005) Sediment trapping by estuarine fronts on a low-energy coast. In: Dynamic Plant 2005 307 - 307. Dynamic Planet

Kalangi PNI, Heron ML & Prytz A (2005) Structure of salinity during ebb tides in the shallow Herbert River estuary, Australia. In: Dynamic Planet 2005 307 - 307. Dynamic Planet

Ridd PV, Heron ML, Stieglitz TC & Orpin A (2005) Predicting cross-shelf nutrient concentrations in the Great Barrier Reef Lagoon. In: Dynamic Planet 2005 448 - 448. Dynamic Planet

Steinberg CR, Choukroun S, Bird J, Mason LB, Bode L, Heron S, Heron ML, Strong A & Hoegh-Guldberg O (2005) The development of thermal stratigication leading to coral bleaching. Two case studies: Schott Reef, Indian Ocean and Heron Island on the Great Barrier Reef. In: Dynamic Planet 2005 191 - 191. Dynamic Planet

biological sciences

Guzik MT, Norman MD & Crozier RH (2005) Molecular phylogeny of the benthic shallow-water octopuses (Cephalopoda: Octopodinae). Molecular Phylogenetics and Evolution, 37, 235 - 248

Lukoschek V, Waycott M & Dunshea GJ (2005) Isolation and characterization of microsatellite loci from the Australian sea snake, Aipysurus laevis. Molecular Ecology Notes, 5, 879 - 881

Marquis CP, Baird AH, de Nys R, Holmstrom C & Koziumi N (2005) An evaluation of the antimicrobial properties of the eggs of 11 species of scleractinian corals. Coral Reefs, 24, 248 - 253

Taylor MW, Schupp PJ, de Nys R, Kjelleberg S & Steinberg PD (2005) Biogeography of bacteria associated with the marine sponge Cymbastela concentrica. Environmental Microbiology, 7, 419 - 433

Whalan SW, Johnson MS, Harvey E & Battershill C (2005) Mode of reproduction, recruitment and genetic subdivision in the brooding sponge Haliclona sp. Marine Biology, 146, 425 - 433

Oakey HJ, Cullen BR & Owens L (2005) A hypothetical Model for VHML Phage Conversion of Vibrio harveyi. In: Proceedings of the Fifth Symposium on Diseases in Asian Aquaculture 457 - 464 (eds PJ Walker, RG Lester & MG Bondad-Reantaso). Asian Fisheries Society

Biochemistry and Cell Biology

Hislop NR, de Jong DM, Hayward DC, Ball EB & Miller DJ (2005) Tandem organization of independently duplicated homeobox genes in the basal cnidarian Acropora millepora. Development, Genes and Evolution, 215, 268 - 273

Leggat WP, Dixon RA, Saleh SAS & Yellowlees D (2005) A novel carbonic anhydrase from the giant clam Tridacna gigas contains two carbonic anhydrase domains. FEBS journal, 272, 3297 - 3305

Miller DJ & Ball EB (2005) Animal evolution: the enigmatic phylum Placozoa revisited. Current Biology, 15 (1), R26-R27

Miller DJ, Ball EB & Technau U (2005) Cnidarians and ancestral genetic complexity in the animal kingdom. Trends in Genetics, 21 (10), 536 - 539

Perna CN, Cappo M, De'ath G, Boyle D, Aumend J, Olbrich R, Hoedt F & Brunskill G (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56, 713 - 723

Technau U, Rudd S, Maxwell P, Gordon PMK, Saina M, Grasso LC, Hayward DC, Sensen CW, Saint R, Holstein TW, Ball EB & Miller DJ (2005) Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians. Trends in Genetics, 21 (12), 633 - 639

Ball EB, Grasso LC, Hayward DC, Saint R & Miller DJ (2005) Dissecting the organizer-organizer gene expression during coral development tract. In: Mechanisms of Development S30. Elsevier, Sydney

de Jong DM, Hislop NR, Hayward DC, Ball EB & Miller DJ (2005) Both dorsal-ventral and anterior-posterior patterning genes are differentially expressed along a single body axis in the cnidarian Acropora millepora. In: Mechanisms of Development S155. Elsevier, Sydney

Grasso LC, Maindonald JH, Hayward DC, Saint R, Miller DJ & Ball EB (2005) Microarray analysis of coral development through gastrulation and metamorphosis. In: Mechanisms of Development S158. Elsevier, Sydney

Heimann KRM (2005) Mechanisms of Metal-induced inhibition of Bioluminescence in Pyrocystis lunula. In: Phycologia 43 - 44. International Phycological Society (4)

Botany

Diaz GA & McCook LJ (2005) Effects of nutrient enhancement on the fecundity of a coral reef macroalga. Journal of Experimental Marine Biology and Ecology, 317, 13 - 24

Waycott M, Longstaff BJ & Mellors J (2005) Seagrass population dynamics and water quality in the Great Barrier Reef region: A review and future research directions. Marine Pollution Bulletin, 51, 343 - 350

Plant Physiology

Furnas M, Mitchell A, Skuza M & Brodie JE (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef Lagoon. Marine Pollution Bulletin, 51, 253 - 265

Zoology

Bailey PCE, Bakker AJ, Seymour JE & Wilce JA (2005) A functional comparison of the venom of three Australian jellyfish--Chironex fleckeri, Chiropsalmus sp., and Carybdea xaymacana--on cytosolic Ca2+, haemolysis and Artemia sp. Lethality. Toxicon, 45, 233 - 242

Jessop TS & Hamann M (2005) Interplay between age class, sex and stress response in green turtles (Chelonia mydas). Australian Journal of Zoology, 53, 131 - 136

Shorten M, Davenport J, Seymour JE, Cross MC, Carrette TJ, Woodward G & Cross TF (2005) Kinematic analysis of swimming in Australian box jelly-fish, Chiropsalmus sp. and Chironex fleckeri (Cuboza, Cnidaria: Chirodropidae). Journal of Zoology, 267, 371 - 380

Seymour JE (2005) Box jellyfish and skin damage: The result of venoms or other factors? In: Australasian Journal of Dermatology 38 - 39. Blackwell publisher

Animal systematics, taxonomy and phylogeny

Blair D (2005) Cestode and trematode infections in Marine Parasitology. In: Marine Parasitology (ed K Rohde), 427 - 446. CABI Publishing and CSIRO Publishing, Oxon UK and Collingwood VIC

Arnold PW, Birtles RA, Dunstan AJ, Lukoschek V & Matthews M (2005) Colour patterns of the dwarf minke whale Balaenoptera acutorostrata sensu lato: description, cladistic analysis and taxonomic implications. Memoirs of the Queensland Museum, 51 (2), 277 - 307

Arnold PW, Birtles RA, Sobtzick S, Matthews M & Dunstan AJ (2005) Gulping behaviour in rorqual whales: underwater observations and functional interpretation. Memoirs of the Queensland Museum, 51 (2), 309 - 332

Beasley IL, Robertson KM & Arnold PW (2005) Description of a new dolphin, the Australian snubfin dolphin Orcaella heinsohni sp. N. (cetacea, delphinidae). Marine Mammal Science, 21 (3), 365 - 400

Brodie GD (2005) Redescription of the Australian endemic nudibranch Dendrodoris maugeana Burn, 1962 (Gastropoda: Opisthobranchia: Doridoidea): new and reviewed features important for phylogenetic analyses of porostomes. Molluscan Research, 25 (1), 37 - 46

Heatwole HF, Busack S & Cogger H (2005) Geographic variation in sea kraits of the Laticauda Colubrina complex (Serpentes:elapidar:hydrophiinae:laticaudini). Herpetological Monographs, 19, 1 - 136

Physiology

Edwards SL, Wall BP, Morrison-Shetlar AI, Sligh S, Weakly J & Claiborne JB (2005) The Effect of Environmental Hypercapnia and Salinity on the Expression of NHE-Like Isoforms in the Gills of a Euryhaline Fish (Fundulus heteroclitus). Journal of Experimental Zoology, 303A, 464 - 475

Frisch AJ & Anderson TA (2005) Physiological stress responses of two species of coral trout (Plectropomus leopardus and Plectropomus maculatus). Comparative Biochemistry and Physiology A - Molecular and Integrative Physiology, 140, 317 - 327

Frisch AJ (2005) Sex-change and gonadal steroids in sequentially-hermaphroditic teleost fish. Reviews in Fish Biology and Fisheries, 14, 481 - 499

Hamann M, Jessop TS, Limpus CJ & Whittier JM (2005) Regional and annual variation in plasma steroids and metabolic indicators in female green turtles, Chelonia mydas. Marine Biology, 148 (2), 427 - 433

Jessop TS & Hamann M (2005) Interplay between age class, sex and stress response in green turtles (Chelonia mydas). Australian Journal of Zoology, 53, 131 - 136

Kintner AH, Seymour JE & Edwards SL (2005) Variation in lethality and effects of two Australian chirodropid jellyfish venoms in fish. Toxicon, 46, 699 - 708

Ramasamy S, Isbister GK, Seymour JE & Hodgson WC (2005) Pharmacologically distinct cardiovascular effects of box jellyfish (Chironex fleckeri) venom and a tentacle-only extract in rats. Toxicology Letters, 155, 219 - 226

Ramasamy S, Isbister GK, Seymour JE & Hodgson WC (2005) The in vivo cardiovascular effects of an Australian box jellyfish (Chiropsalmus sp.) venom in rats. Toxicon, 45 (1), 321 - 327

Sachlikidis NG, Jones C & Seymour JE (2005) Reproductive cues in Panulirus ornatus. New Zealand Journal of Marine and Freshwater Research, 39, 305 - 310

Hamann M & Jessop TS (2005) Stress-proofed sea turtles. Nature Australia, spring, 38 - 45

Edwards SL, Morrison-Shetlar AI, Weakley J, Choe KP & Claiborne JB (2005) Molecular identification of Na+/H+ isoforms in the gills of the dogfish shark (Squalus acanthias). In: The Federation of American Societies for Experimental Biology (FASEB) A139. The Federation of American Societies for Experimental Biology, USA (4)

Edwards SL, Freji A & Claiborne JB (2005) Evidence for NHE2 expression in the rectal gland of the spiny dogfish, Squalus acanthias. In: ANZSCPB Proceedings 29 - 29. Australian and New Zealand Society for Comparative Physiology and Biochemistry, New Zealand

Weakley J, Claiborne JB & Edwards SL (2005) In vivo analysis of salinity related proton efflux in barramundi (Lates calcifer). In: ANZSCPB Proceedings 53 - 53. Australian and New Zealand Society for Comparative Physiology and Biochemistry, New Zealand

Ecology and Evolution

Baker R & Sheaves MJ (2005) Redifining the piscivore assemblage of shallow estuarine nursery habitats. Marine Ecology-Progress Series, 291, 197 - 213

Behrensmeyer AK, Fursich FT, Gastaldo RA, Kidwell SM, Kosnik M, Kowalewski M, Plotnick RE, Rogers RR & Alroy J (2005) Are the most durable shelly taxa also the most common in the marine fossil record? Paleobiology, 31 (4), 607 - 623

Bellwood DR, Hughes TP, Connolly SR & Tanner J (2005) Environmental and geometric constraints on Indo-Pacific coral reef. Ecology Letters, 8, 643 - 651

Brodie JE & Mitchell AW (2005) Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56, 279 - 302

Depczynski M & Bellwood DR (2005) Shortest recorded vertebrate lifespan found in a coral reef fish. Current Biology, 15 (8), 288 - 289

Konow N & Bellwood DR (2005) Prey-capture in Pomacanthus semicirculatus (Teleostei, Pomacanthidae): functional implications of intramandibular joints in marine angelfishes. Journal of Experimental Biology, 208, 1421 - 1433

Kritzer JP & Davies CR (2005) Demographic variation within spatially structured reef fish populations: when are larger-bodied subpopulations more important? Ecological Modelling, 182 (1), 49 - 65

Sheaves MJ (2005) Nature and consequences of biological connectivity in mangrove systems. Marine Ecology-Progress Series, 302, 293 - 305

Westneat M, Alfaro ME, Wainwright P, Bellwood DR, Grubich JR, Fessler JL, Clements KD & Smith LL (2005) Local phylogenetic divergence and global evolutionary convergence of skull function in reef fishes of the family Labridae. Proceedings of the Royal Society of London Series B-Biological Sciences, 272, 993 - 1000

Thomas C, Hart BT, Nicholson A, Grace MR, Brodie JE & Pollino CA (2005) Development of criteria for simplifying ecological risk models. In: International Congress on Modelling and Simulation 772 - 778 (eds A Zerger & RM Argent). Modelling and Simulation Society of Australia and New Zealand, Melbourne

Bellwood DR (2005) Patterns, Origins and consequences of biodiversity in coral reef fishes. In: The 7th Indo-Pacific Fish Conference . Ichthyological Society of Taiwan

Pearson RG (2005) Catchment and Reef- Two parts of a Continuum. In: CD-CRom . Australian Water Association Inc

Marine and estuarine ecology (incl. Marine ichthyology)

Andre J, Gyuris E & Lawler IR (2005) Comparison of the diets of sympatric dugongs and green turtles on the Orman Reefs, Torres Strait, Australia. Wildlife Research, 32, 53 - 62

Annese DM & Kingsford MJ (2005) Distribution, movements and diet of nocturnal fishes on temperate reefs. Environmental Biology of Fishes, 72, 161 - 174

Anthony K, Hoogenboom MO & Connolly SR (2005) Adaptive variation in coral geometry and the optimization of internal colony light climates. Functional Ecology, 19, 17 - 26

Arthur R, Done T & Marsh HD (2005) Benthic recovery four years after an El Nino induced coral mass mortality in the Lakshadweep atolls. Current Science, 89 (4), 694 - 699

Baird AH, Campbell SJ, Anggoro AW, Ardiwijaya RL, Fadli N, Herdiana Y, Kartawijaya T, Mahyiddin D, Mukminin A, Pardede ST, Pratchett MS, Rudi E & Siregar A (2005) Acehnese reefs in the wake of the Asian Tsunami. Current Biology, 15, 1926 - 1930

Bergenius MA, McCormick MI, Meekan MG & Robertson DR (2005) Environmental influences on larval duration, growth and magnitude of settlement of a coral reef fish. Marine Biology, 147, 291 - 300

Berumen ML, Pratchett MS & McCormick MI (2005) Within-reef differences in diet and body condition of coral-feeding butterflyfishes (Chaetodontidae). Marine Ecology-Progress Series, 287, 217 - 227

Brodie JE, Fabricius K, De'ath G & Okaji K (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? An appraisal of the evidence. Marine Pollution Bulletin, 51, 266 - 278

Browne JG & Kingsford MJ (2005) A commensal relationship between the scyphozoan medusae Catostylus mosaicus and the copepod Paramacrochiron maximum. Marine Biology, 146, 1157 - 1168

Ceccarelli DM, Jones GP & McCook LJ (2005) Effects of territorial damselfish on an algal-dominated coastal coral reef. Coral Reefs, 24, 606 - 620

Ceccarelli DM, Jones GP & McCook LJ (2005) Foragers versus farmers: contrasting effects of two behavioural groups of herbivores on coral reefs. Oecologia, 145, 445 - 453

Clouse RM, Janies DA & Kerr A (2005) Resurrection of Bohadschia bivittata from B. marmorata (Holothuroidea: Holothuriidae) based on behavioral, morphological, and mitochondrial DNA evidence. Zoology, 108, 27 - 39

Crossman DJ, Choat JH & Clements KD (2005) Nutritional ecology of nominally herbivorous fishes on coral reefs. Marine Ecology-Progress Series, 296, 129 - 142

Depczynski M & Bellwood DR (2005) Wave energy and spatial variability in community structure of small cryptic coral reef fishes. Marine Ecology-Progress Series, 303, 283 - 293

Fisher R, Leis JM, Clark DL & Wilson SK (2005) Critical swimming speeds of late-stage coral reef fish larvae: variation within species, among species and between locations. Marine Biology, 147, 1201 - 1212

Fisher R (2005) Swimming speeds of larval coral reef fishes: impacts on self-recruitement and dispersal. Marine Ecology-Progress Series, 285, 223 - 232

Friesen VL, Birt TP, Piatt JF, Golightly R, Newman SJN, Hebert P, Congdon B & Gissing GJ (2005) Population genetic structure and conservation of marbled murrelets (Brachyramphus marmoratus). Conservation genetics, 6, 607 - 614

Fulton CJ, Bellwood DR & Wainwright P (2005) Wave energy and swimming performance shape coral reef fish assemblages. Proceedings of the Royal Society of London Series B-Biological Sciences, 272, 827 - 832

Furnas M, Mitchell A, Skuza M & Brodie JE (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef Lagoon. Marine Pollution Bulletin, 51, 253 - 265

Gardiner NM & Jones GP (2005) Habitat specialisation and overlap in a guild of coral reef cardinalfishes (Apogonidae). Marine Ecology-Progress Series, 305, 163 - 175

Gardner L, Anderson TA, Place A, Dixon B & Elizur A (2005) Sex change strategy and the aromatase genes. Journal of Steriod Biochemistry & Molecular Biology, 94, 395 - 404

Guest J, Baird AH, Goh B & Chou L (2005) Reproductive seasonality in an equatorial assemblage of scleractinian corals. Coral Reefs, 24, 112 - 116

Harrington L, Fabricius K, Eaglesham G & Negri A (2005) Synergistic effects of diuron and sedimentation on photosynthesis and survival of crutose coralline algae. Marine Pollution Bulletin, 51, 415 - 427

Hernaman V & Munday PL (2005) Life-history characteristics of coral reef gobies. 1. Growth and life-span. Marine Ecology-Progress Series, 290, 207 - 221

Hernaman V & Munday PL (2005) Life-history characteristics of coral reef gobies. 2. Mortality rate, mating system and timing of maturation. Marine Ecology-Progress Series, 290, 223 - 237

Hixon MA & Jones GP (2005) Competition, predation, and density-dependent mortality in demersal marine fishes. Ecology, 86, 2847 - 2859

Hughes TP, Bellwood DR, Folke C, Steneck RS & Wilson J (2005) New paradigms for supporting the resilience of marine ecosystems. Trends in Ecology & Evolution, 20 (7), 380 - 386

Kerr A (2005) Molecular and morphological supertree of stony corals (Anthozoa: Scleractinia) using matrix representation parsimony. Biological Reviews of the Cambridge Philosophical Society, 80, 543 - 558

Kerr A, Janies DA, Clouse RM, Samyn Y, Kuszak J & Kim J (2005) Molecular Phylogeny of Coral-Reef Sea Cucumbers (Holothuriidae: Aspidochirotida) based on 16S Mitochondrial Ribosomal DNA Sequence. Marine Biotechnology, 7, 53 - 60

Kingsford MJ & Hughes J (2005) Patterns of growth, mortality and size of the tropical damselfish Acanthochromis polyacanthus across the continental shelf of the Great Barrier Reef. Fishery Bulletin, 103, 561 - 573

Kroon FJ, Munday PL, Westcott D, Hobbs JA & Liley NR (2005) Aromatase pathway mediates sex change in each direction. Proceedings of the Royal Society of London Series B-Biological Sciences, 272, 1399 - 1405

Larson KOJ & McCormick MI (2005) The role of chemical alarm signals in facilitating learned recognition of novel chemical cues in a coral reef fish. Animal Behaviour, 69, 51 - 57

Madin JS (2005) Mechanical limitations of reef corals during hydrodynamic disturbances. Coral Reefs, 24, 630 - 635

Marsh HD, De'Ath AG, Gribble NA & Lane B (2005) Historical Marine Population Estimates: Triggers or Targets for Conservation? The dugong case study. Ecological Applications, 15 (2), 481 - 492

Mellors JE, Waycott M & Marsh HD (2005) Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region. Marine Pollution Bulletin, 51 (1-4), 335 - 342

Messmer V, Jones GP, van Herwerden L & Munday PL (2005) Genetic and ecological characterisation of colour dimorphism in a coral reef fish. Environmental Biology of Fishes, 74, 175 - 183

Miller-Sims V, Delaney M, Atema J, Kingsford MJ & Gerlach G (2005) DNA microsatellites in Acanthochromis polyacanthus. Molecular Ecology Notes, 5, 841 - 843

Moland E, Eagle JV & Jones GP (2005) ecology and evolution of mimicry in coral reef fishes. Oceanography and Marine Biology, 43, 455 - 482

Patterson HM & Kingsford MJ (2005) Elemental signatures of Acanthochromis polyacanthus otoliths from the Great Barrier Reef have significant temporal, spatial, and between-brood variation. Coral Reefs, 24, 360 - 369

Pratchett MS (2005) Dietary overlap among coral-feeding butterflyfishes (Chaetodontidae) at Lizard Island, northern Great Barrier Reef. Marine Biology, 148, 373 - 382

Pratchett MS (2005) Dynamics of an outbreak population of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995-1999). Coral Reefs, 24, 453 - 462

Schaffelke B & Deane D (2005) Desiccation tolerance of the introduced marine green alga Codium fragile ssp. Tomentosoides - clues for likely transport vectors? Biological Invasions, 7 (4), 557 - 565

Schaffelke B, Mellors JE & Duke NC (2005) Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities. Marine Pollution Bulletin, 51, 279 - 296

Williams AJ, Davies CR & Mapstone BD (2005) Variation in the periodicity and timing of increment formation in red throat emperor (Lithrinus miniatus) otoliths. Marine and Freshwater Research, 56, 529 - 538

Wittenrich ML & Munday PL (2005) Bi-directional sex change in coral reef fishes from the family Pseudochromidae: An experimental evaluation. Zoological Science, 22, 797 - 803

Wong M, Munday PL & Jones GP (2005) Habitat patch size, facultative monogamy and sex change in a coral-dwelling fish, Caracanthus unipinna. Environmental Biology of Fishes, 74, 141 - 150

Yakovleva IM & Baird AH (2005) Ontogenetic change in the abundance of mycosporine-like amino acids in non-zooxanthellate coral larvae. Coral Reefs, 24, 443 - 452

Atema J, Gerlach G & Kingsford MJ (2005) Dispersal of Reef fish larvae at the 1-10 km scale: Hydrography, genetics and behaviour. In: The 7th Indo-pacific fish conference . Ichthyological Society of Taiwan

Brodie JE (2005) Sources and fate of terrestrially derived nitrogen in the Great Barrier Reef. In: Rainforest meets Reef Conference Abstracts. CRC Reef Research Centre Technical Report No. 64 22 - 22 (eds CL Goggin & T Harvey). CRC Reef Research Centre, Townsville

Burrows DW (2005) The role of coastal wetlands and priorities for their management along the GBR coast. In: Rainforest meets Reef Conference Abstracts. CRC Reef Research Centre Technical Report No. 64 23 - 23 (eds CL Goggin & T Harvey). CRC Reef Research Centre, Townsville

Dornelas MAA, Connolly SR & Hughes TP (2005) Community similarity, neutral dynamics, and coral reef biodiversity. In: Ecology at multiple scales . The ecological society of America

Jones GP, Planes S & Thorrold S (2005) Faith, Hope and Reality! Can we directly measure larval dispersal and incorporate this into the design of marine reserve networks. In: 29th Annual Larval Fish Conference . Institut de Ciencies del mar

Kingsford MJ (2005) The influence of El Nino on temporal patterns of reef fish abundance. In: The 7th Indo-Pacific Fish Conference . Howard International House

Klanten SO, Choat JH & van Herwerden L (2005) Evolutionary history of several coral reef fishes. In: The 7th Indo-Pacific Fish Conference 16 - 16. Ichthyological Society of Taiwan

Planes S, Jones GP & Thorrold S (2005) Coral Reef Fish larvae return home. In: 29th Annual Larval Fish Conference . Institut de Ciencies del Mar

Read CI, Bellwood DR & van Herwerden L (2005) Ancient origins of Indo-Pacific coral reef fishes: A molecular phylogeny of the leopard wrasses (Labridae: Macropharyngodon). In: The 7th Indo-Pacific Fish Conference 16 - 16. Ichthyological Society of Taiwan

Life histories (incl. Population ecology)

Baird IG & Beasley IL (2005) Irrawaddy dolphin Orcaella brevirostris in the Cambodian Mekong River: an initial survey. Oryx, 39 (3), 301 - 310

Hernaman V & Munday PL (2005) Life-history characteristics of coral reef gobies. 1. Growth and life-span. Marine Ecology-Progress Series, 290, 207 - 221

Hernaman V & Munday PL (2005) Life-history characteristics of coral reef gobies. 2. Mortality rate, mating system and timing of maturation. Marine Ecology-Progress Series, 290, 223 - 237

Jones GP, Planes S & Thorrold S (2005) Coral Reef Fish larvae settle close to home. Current Biology, 15, 1314 - 1318

Patterson HM, Kingsford MJ & McCulloch MT (2005) Resolution of the early life history of a reef fish using otolith chemistry. Coral Reefs, 24, 222 - 229

Srinivasan M (2005) Extended recruitment seasons on a low latitude coral reef: the influence of temperature, rainfall and larval production. In: 29th Annual Larval Fish Conference . Institut de Ciencies del Mar.

Sociobiology and behavioural ecology

Barnett A & Bellwood DR (2005) Sexual Dimorphism in the buccal cavity of paternal mouthbrooding cardinalfishes (Pisces: Apogonidae). Marine Biology, 148, 205 - 212

Wittenrich ML & Munday PL (2005) Bi-directional sex change in coral reef fishes from the family Pseudochromidae: An experimental evaluation. Zoological Science, 22, 797 - 803

Wong M, Munday PL & Jones GP (2005) Habitat patch size, facultative monogamy and sex change in a coral-dwelling fish, Caracanthus unipinna. Environmental Biology of Fishes, 74, 141 - 150

Conservation and biodiversity

Andre J, Gyuris E & Lawler IR (2005) Comparison of the diets of sympatric dugongs and green turtles on the Orman Reefs, Torres Strait, Australia. Wildlife Research, 32, 53 - 62

Baird IG & Beasley IL (2005) Irrawaddy dolphin Orcaella brevirostris in the Cambodian Mekong River: an initial survey. Oryx, 39 (3), 301 - 310

Connolly SR, Hughes TP, Bellwood DR & Karlson RH (2005) Community structure of corals and reef fishes at multiple scales. Science, 309, 1363 - 1365

Fernandes L, Day J, Lewis A, Slegers S, Kerrigan B, Breen D, Cameron D, Jago B, Hall J, Lowe D, Innes J, Tanzer J, Chadwick V, Thompson L, Gorman K, Simmons M, Barnett BEW, Sampson K, De'ath G, Mapstone BD, Marsh HD, Possingham H, Ball I, Ward T, Dobbs K, Aumend J, Slater D & Stapleton K (2005) Establishing Representative No-Take areas in the Great Barrier Reef: Large-Scale Implementation of Theory on Marine Protected Areas. Conservation Biology, 19 (6), 1733 - 1744

Green BS & McCormick MI (2005) Maternal and paternal effects determine size, growth and performance in larvae of a tropical reef fish. Marine Ecology-Progress Series, 289, 263 - 272

Green BS & McCormick MI (2005) Oxygen replenishment to fish nests: males adjust brood care to ambient conditions and brood development. Behavioral Ecology, 16, 389 - 397

Pandolfi JM, Jackson JBC, Baron N, Bradbury RH, Guzman HM, Hughes TP, Kappel CV, Micheli F, Ogden JC, Possingham H & Sala E (2005) Are U.S. Coral Reefs on the slippery slope to slime? Science, 307 (5716), 1725 - 1726

Perrin W, Reeves R, Dolar M, Jefferson T, Marsh HD, Wang J & Estacion J (2005) Report of the second workshop on the biology and conservation of small cetaceans and dugongs of south-east Asia. In: CMS Technical Series Publication (eds Perrin et al). UNEP/CMS Secretariat, Bonn, Germany

Information Systems

McKergow L, Prosser IP, Hughes AO & Brodie JE (2005) Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51, 199

Fisheries Sciences

Begg GA, O'Neill MF, Cadrin SX & Bergenius MA (2005) Stock Assessment of the Australian East Coast Spotted Mackerel Fishery. CRC Reef Research Centre, PO Box 772, Townsville, Australia 4810

Abesamis RA & Russ GR (2005) Density-dependent spillover from a marine reserve: Long-term evidence. Ecological Applications, 15 (5), 1798 - 1812

Alcala AC, Russ GR, Maypa AP & Calumpong HC (2005) A long-term, spatially replicated experimental test of the effect of marine reserves on local fish yields. Canadian Journal of Fisheries and Aquatic Sciences, 62, 98 - 108

Begg GA, Campana SE, Fowler AJ & Suthers IM (2005) Otolith research and application: current directions in innovation and implementation. Marine and Freshwater Research, 56, 477 - 483

Begg GA, Mapstone BD, Williams AJ, Adams S, Davies CR & Lou D (2005) Multivariate life-history indices of exploited coral reef fish populations used to measure the performance of no-take zones in a marine protected area. Canadian Journal of Fisheries and Aquatic Sciences, 62, 679 - 692

Bergenius MA, Mapstone BD, Begg GA & Murchie CD (2005) The use of otolith chemistry to determine stock structure of three epinepheline serranid coral reef fishes on the Great Barrier Reef, Australia. Fisheries Research, 72, 253 - 270

Cinner JE, Marnane MJ & McClanahan TR (2005) Conservation and Community Benefits from Traditional Coral Reef Management at Ahus Island, Papua New Guinea. Conservation Biology, 19 (6), 1714 - 1723

Cinner JE (2005) Socioeconomic factors influencing customary marine tenure in the Indo-Pacific. Ecology and Society, 10 (1),

Lou D, Mapstone BD, Russ GR, Davies CR & Begg GA (2005) Using otolith weight-age relationships to predict age-based metrics of coral fish reef populations at different spatial scales. Fisheries Research, 71, 279 - 294

Russ GR, Stockwell B & Alcala AC (2005) Inferring versus measuring rates of recovery in no-take marine reserves. Marine Ecology-Progress Series, 292, 1 - 12

Sale PF, Cowen RK, Danilowicz BS, Jones GP, Kritzer J, Lindeman K, Planes S, Polunin NVC, Russ GR, Sadovy YJ & Steneck RS (2005) Critical science gaps impede use of no-take fishery reserves. Trends in Ecology & Evolution, 20 (2), 74 - 80

Sutton SG (2005) Factors influencing boater satisfaction in Australia's Great Barrier Reef Marine Park. Tourism in Marine Environments, 2 (1), 13 - 22

Miller-Sims V, Delaney M, Atema J, Kingsford MJ & Gerlach G (2005) DNA microsatellites in the neon damselfish (Pomacentrus coelestis). Molecular Ecology Notes, 5, 424 - 426

Aquaculture

Acosta-Salmon H & Southgate PC (2005) Histological changes in the gonad of the blacklip pearl oyster (Pinctada margaritifera Linnaeus, 1758) during the reproductive season in North Queensland, Australia. Molluscan Research, 25 (2), 71 - 74

Acosta-Salmon H & Southgate PC (2005) Mantle regeneration in the pearl oysters Pinctada fucata and Pinctada Margaritifera. Aquaculture, 246, 447 - 453

Acosta-Salmon H, Martinez Fernandez E & Southgate PC (2005) Use of relaxants to obtain saibo tissue from the blacklip pearl oyster (Pinctada margaritifera) and the Akoya pearl Oyster (Pinctada fucata). Aquaculture, 246, 167 - 172

Fielder S, Bardsley W, Allan G & Pankhurst P (2005) The effects of salinity and temperature on growth and survival of Australian Snapper, Pagrus auratus larvae. Aquaculture, 250, 201 - 214

Fraser MR & de Nys R (2005) The morphology and occurrence of jaw and operculum deformities in cultured barramundi (Lates calcarifer) larvae. Aquaculture, 250, 496 - 503

Huggett MJ, de Nys R, Williamson JE, Heasman M & Steinberg PD (2005) Settlement of larval blacklip abalone, Haliotis rubra, in response to green and red macroalgae. Marine Biology, 147, 1155 - 1163

Munro JL & Owens L (2005) Haemaglutination as a low-cost detection method for gill-associated virus and by inference, yellowhead virus in Penaeus monodon Fabricius, 1798. Aquaculture Research, 2005 (36), 1369 - 1373

Rabbani A & Zeng C (2005) Effects of tank colour on larval survival and development of mud crab scylla serrata (Forskal). Aquaculture Research, 36, 1112 - 1119

Robertson DR, Ackerman JL, Choat JH, Posada JM & Pitt J (2005) Ocean surgeonfish Acanthurus bahianus. I. The geography of demography. Marine Ecology-Progress Series, 295, 229 - 244

Robertson DR, Choat JH, Posada JM, Ackerman JL & Pitt J (2005) Ocean surgeonfish Acanthurus bahianus. II. Fishing effects on longevity, size and abundance? Marine Ecology-Progress Series, 245, 245 - 256

Saucedo PE, Bervera-Leon H, Monteforte M, Southgate PC & Monsalvo-Spencer P (2005) Factors influencing recruitment of hatchery reared pearl oyster (Pinctada Mazatlanica; Hanley 1856) spat. Journal of Shellfish Research, 24 (1), 215 - 219

Knauer J, Taylor JJU, Evans BS & Jerry DR (2005) Ongoing research yields improvements in hatchery management of silver, gold-lip pearl oysters. Global Aquaculture Advocate,

Evans BS, Knauer J, Taylor JJU & Jerry DR (2005) A reliable DNA pedigree system for Pinctada maxima breeding studies. In: International Peace and Development through aquaculture 181 - 181. World Aquaculture

Flegel TW, Lightner D, Lo C & Owens L (2005) Shrimp disease control: the past, present and future. In: 6th Symposium on Diseases in Asian Aquaculture 44 - 45 (ed Fish Health Section - Asian Fisheries Soc). Fish Health Section of the Asian Fisheries Society

Genodepa J, Zeng C & Southgate PC (2005) Binders for mud crab Scylla serrata larval microbound diets. In: larval culture 27 - 27. European Commissio

Genodepa J, Southgate PC & Zeng C (2005) Use of dietary 14C in nutritional studies of mud crab Scylla serrata larvae. In: Larval Culture . European Commission

La Fauce KA, Elliman JR & Owens L (2005) Characterisatoin of hepatopancreatic parvovirus (HPV) isolated from Australian Penaeus merguiensis. In: FRDC Aquatic Animal Health Subprogram Scientific Conference (eds Crane & Slater). Fisheries Research and Development Corporation

Martinez Fernandez E, Southgate PC & Acosta-Salmon H (2005) The nutritional value of diets based on tropical microalgae for blacklip pearl oyster Pinctada margaritifera larvae. In: International peace and development through aquaculture . World Aquaculture 2005

Munro JL & Owens L (2005) The effect of gill-associated virus on the production of Penaeus momodon and a comparison of alternative tests for detection. In: FRDC Aquatic Animal Health Subprogram Scientific Conference (eds Crane & Slater). Fisheries Research and Development Corporation

Munro JL, Owens L & Callinan RB (2005) The effect of gill-associated virus on the production of Penaeus monodon within Australian prawn farms. In: 6th Symposium on Diseases in Asian Aquaculture 84 (ed Fish Health Section - Asian Fisheries Soc). Fish Health Section of the Asian Fisheries Society

Nurdiani R & Zeng C (2005) Effects of temperature and salinity on the survival and development of the mud crab scylla serrata (forsskal) larvae. In: Larval culture . Europena Commission

Soetrisno CK & Owens L (2005) The use of different tissues and preservation methods to determine the presence of SP70 in salinity-stressed tiger prawn (Penaeus monodon Fab). In: FRDC Aquatic Animal Health Subprogram Scientific Conference (eds Crane & Slater). Fisheries Research and Development Corporation

Zeng C, Southgate PC, Genodepa J, Bamford HM & Holme M-H (2005) Development of microbound diets for crab larvae. In: Fish and Shellfish larviculture symposium 583 - 584. European Aquaculture Society

Zeng C & Rabbani A (2005) Effects of background colour of culture vessel on the larval survival and development of the mud crab scylla serrata,. In: international peace and development through aquaculture . World Aquaculture

Zeng C, Kim J-C & Anderson TA (2005) Evaluating factors affect viability of newly hatched larvae of the mud crab. In: International Peace and development through aquaculture . World Aquaculture

Environmental Sciences

Devlin M & Brodie JE (2005) Terresrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Marine Pollution Bulletin, 51, 9 - 22

Floerl O, Inglis GJ & Hayden BJ (2005) A Risk-Based Predictive Tool to Prevent Accidental Introductions of Nonindigenous Marine Species. Environmental Management, 35 (6), 765 - 778

Floerl O, Inglis GJ & Marsh HD (2005) Selectivity in vector management: an investigation of the effectiveness of measures used to prevent transport of non-indigenous species. Biological Invasions, 7, 459 - 475

Floerl O & Inglis GJ (2005) Starting the invasion pathway: the interaction between source populations and human transport vectors. Biological Invasions, 7, 589 - 606

Jacobsen B (2005) Policy options for Great Barrier Reef water quality. Ecological Management & Restoration, 6 (2), 134 - 136

McKergow L, Prosser IP, Hughes AO & Brodie JE (2005) Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51, 199

Mitchell C, Brodie JE & White I (2005) Sediments, nutrients and pesticide residues in event flow conditions in streams of the Mackay Whitsunday Region, Australia. Marine Pollution Bulletin, 51, 23 - 36

Moss A, Brodie JE & Furnas M (2005) Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51, 76 - 88

Conservation

Beasley IL, Robertson KM & Arnold PW (2005) Description of a new dolphin, the Australian snubfin dolphin Orcaella heinsohni sp. N. (cetacea, delphinidae). Marine Mammal Science, 21 (3), 365 - 400 Chilvers BL, Lawler IR, Macknight F, Marsh HD, Noad MJ & Paterson RA (2005) Moreton Bay, Queensland, Australia: an example of the co-existence of significant marine mammal populations and large-scale coastal development. Biological Conservation, 122, 559 - 571

Public Health and Health Services

Barnett FA, Durrheim DN, Speare R & Muller R (2005) Management of Irukandji syndrome in northern Australia. Rural and Remote Health, 5, 369 - 369

Environmental and occupational health and safety

Carter AD, Muller R & Thompson AA (2005) The rate of decompression sickness in scientific diving at the Australian Institute of Marine Science (Townsville) 1996 to 2001. SPUMS Journal, 35, 125 - 130

Tourism

Bentrupperbaumer JM (2005) Human Dimension of Wildlife Interactions. In: Wildlife Tourism (eds D Newsome, RK Dowling & SA Moore), 82 - 112. Channel View Publications, Clevedon

Stoeckl NE, Smith A, Newsome D & Lee D (2005) Regional economic dependence on iconic wildlife tourism: Case studies of Monkey Mia and Hervey Bay. Journal of Tourism Studies, 16 (1), 69 - 81

Walker KB (2005) Expeditions in sustainable tourism: Evaluating interpretation on expedition cruises. In: Fourth Annual Asia Pacific Forum for Graduate Student Research in Tourism 151 - 172 (ed DL Spears). University of Hawai'i at Manoa, Hawaii

Birtles RA, Curnock MI, Dobbs K, Smyth D, Arnold PW, Marsh HD, Valentine PS, Limpus CJ, Hyams W, Dunstan AJ, Charles D, Gatley C, Mangott AH, Miller DK, Hodgson AJ, Emerick S & Kendrick A (2005) Towards sustainable management of dugong and turtle tourism. In: Final Report to the Commonwealth Department of the Environment and Heritage - Phase II

Smith A, Newsome D, Lee D & Stoeckl NE (2005) The role of wildlife icons as major tourist attractions: Case Studies: Monkey Mia dolphins and Hervey Bay whale watching. 161 pp.. CRC for Sustainable Tourism, Brisbane, Queensland

Tourist behaviour

Lee W-H & Moscardo GM (2005) Understanding the impact of ecotourism resort experiences on tourists' environmental attitudes and behavioural intentions. Journal of Sustainable Tourism, 13 (6), 546 - 565

Murphy LE & Norris AC (2005) Understanding Great Barrier Reef visitors: Segmentation according to Reef trip benefits. Tourism in Marine Environments, 1 (2), 71 - 87

Pearce PL (2005) Understanding environmental optimists and pessimists and Australia's Great Barrier Reef. In: Recent advances in marine science and technology, 2004 263 - 271 (ed NK Saxena). PACON International, Hawaii

Tourism management

Moscardo GM (2005) Issues in managing sustainable marine recreation and tourism. In: Recent advances in marine science and technology, 2004 241 - 249 (ed NK Saxena). PACON International, Hawaii

Human Geography